MolNFT v1 · #171133 · protein + DNA
Cohesin complex with loader gripping DNA
6YUF: “Cohesin complex with loader gripping DNA”. Electron microscopy, 2 ligands (BEF, ADP). MolNFT v1 #171133 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YUF
- Type
- protein + DNA
- Length
- 2,328 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P30776, Q09725, O94383, O42649
- Ligands
- BEF, ADP
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 152 | — | P30776 |
| D | — | protein | 1272 | — | Q09725 |
| A | — | protein | 384 | — | O94383 |
| C | — | protein | 456 | — | O42649 |
| X | — | dna | 32 | — | — |
| Y | — | dna | 32 | — | — |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · 2 copies · chains A, C
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YUF · Cohesin complex with loader gripping DNA · the same entry in another collection · chain Y against Y, TM-score 1.00
- O94383 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.94
- Q09725 · AlphaFold monomer V2.0 prediction for sister chromatid cohesion protein MIS4 (Q09725) · a predicted model of the same protein · chain D against A, TM-score 0.86
- O42649 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 3… · a predicted model of the same protein · chain C against A, TM-score 0.75
- P30776 · AlphaFold monomer V2.0 prediction for cohesin subunit RAD21 (P30776) · a predicted model of the same protein · chain B against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30776
- Every structure of UniProt Q09725
- Every structure of UniProt O94383
- Every structure of UniProt O42649
- Elsewhere: RCSB PDB 6YUF · PDBe 6YUF · UniProt P30776 · UniProt Q09725 · UniProt O94383 · UniProt O42649
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