MolNFT v1 · #171089 · protein

Magnesium chelatase H subunit (chlh) E660D variant from synechocystis SP.PCC6803

6YT0 · Mg-chelatase subunit chlh: “Magnesium chelatase H subunit (chlh) E660D variant from synechocystis SP.PCC6803”. X-ray diffraction, 20 pockets (best druggability 0.85). MolNFT v1 #171089 on GenesisL1: 3D structure, binding sites and…

PDB: 6YT0
Type: protein
Length: 2,455 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mg-chelatase subunit chlh
UniProt: P73020
Pockets: 20 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Mg-chelatase subunit chlh	protein	1207	50% helix, 14% strand	P73020
A	Mg-chelatase subunit chlh	protein	1248	50% helix, 14% strand	P73020

Pockets

20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	353	0.85	0.94	51	empty
2	276	0.83	0.94	37	empty
3	188	0.83	0.97	39	empty
4	956	0.78	0.80	75	empty
5	51	0.71	0.98	18	empty

Interfaces

1 interface between chains.

B–A · 645 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

6YT0 · Magnesium chelatase H subunit (ChlH) E660D variant from Synechocystis sp.PCC6803 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73020
Elsewhere: RCSB PDB 6YT0 · PDBe 6YT0 · UniProt P73020

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