MolNFT v1 · #171065 · protein + RNA
Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
6YS5: “Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head”. Electron microscopy, 1 ligand (MG). MolNFT v1 #171065 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YS5
- Type
- protein + RNA
- Length
- 1,329 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D0CD03, D0C9P7, D0CG36, D0CCZ6, D0CD19, D0CD10, D0CD01
- Ligands
- MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 3 | — | rna | 453 | — | — |
| 7 | — | rna | 20 | — | — |
| 9 | — | rna | 4 | — | — |
| d | — | protein | 210 | — | D0CD03 |
| h | — | protein | 117 | — | D0C9P7 |
| j | — | protein | 127 | — | D0CG36 |
| k | — | protein | 100 | — | D0CCZ6 |
| n | — | protein | 115 | — | D0CD19 |
| o | — | protein | 100 | — | D0CD10 |
| t | — | protein | 83 | — | D0CD01 |
Ligands and binding sites
- MG · Magnesium ion · metal · 24 copies · chains 3, o, j, n
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YS5 · Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head · the same entry in another collection · chain 3 against 3, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0CD03
- Every structure of UniProt D0C9P7
- Every structure of UniProt D0CG36
- Every structure of UniProt D0CCZ6
- Every structure of UniProt D0CD19
- Every structure of UniProt D0CD10
- Every structure of UniProt D0CD01
- Elsewhere: RCSB PDB 6YS5 · PDBe 6YS5 · UniProt D0CD03 · UniProt D0C9P7 · UniProt D0CG36 · UniProt D0CCZ6 · UniProt D0CD19 · UniProt D0CD10 · UniProt D0CD01
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