MolNFT v1 · #170902 · RNA
Crystal structure of the SAM-sah riboswitch with AMP
6YMK: “Crystal structure of the SAM-sah riboswitch with AMP”. X-ray diffraction, 2 ligands (NA, SO4). MolNFT v1 #170902 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YMK
- Type
- RNA
- Length
- 219 nucleotides
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NA, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, F, I, O | — | rna | 27 | — | — |
| B, G | — | rna | 10 | — | — |
| D, J, N, P | — | rna | 9 | — | — |
| M | — | rna | 28 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YMK · Crystal structure of the SAM-SAH riboswitch with AMP · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YMK · PDBe 6YMK
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