MolNFT v1 · #170878 · protein
Egfp in neutral pH, directionality of optical properties of fluorescent proteins
6YLQ: “Egfp in neutral pH, directionality of optical properties of fluorescent proteins”. X-ray diffraction, 2 ligands (CRO, MG), 2 pockets (best druggability 0.76). MolNFT v1 #170878 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6YLQ
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Egfp
- Ligands
- CRO, MG
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Egfp | protein | 226 | 12% helix, 52% strand | — |
Ligands and binding sites
- CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.76 | 0.97 | 25 | CRO |
| 2 | 71 | 0.35 | 0.77 | 13 | empty |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 6YLQ · EGFP in neutral pH, Directionality of Optical Properties of Fluorescent Proteins · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YLQ · PDBe 6YLQ
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.