MolNFT v1 · #170876 · protein

MTURQUOISE2 - directionality of optical properties of fluorescent proteins

6YLO · MTURQUOISE2_C2221: “MTURQUOISE2 - directionality of optical properties of fluorescent proteins”. X-ray diffraction, 2 ligands (SWG, K), 2 pockets (best druggability 0.73). MolNFT v1 #170876 on GenesisL1: 3D structure, binding sites…

PDB: 6YLO
Type: protein
Length: 227 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MTURQUOISE2_C2221
Ligands: SWG, K
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MTURQUOISE2_C2221	protein	227	11% helix, 53% strand	—

Ligands and binding sites

SWG · 2-[(4Z)-2-[(1R)-1-amino-2-hydroxy-ethyl]-4-(1H-indol-3-ylmethylidene)-5-oxo-imidazol-1-yl]ethanoic acid · ligand · chains A
K · Potassium ion · metal · chains A
PG4 · Tetraethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.73	0.97	22	SWG
2	55	0.29	0.75	12	K

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

6YLO · mTurquoise2 - Directionality of Optical Properties of Fluorescent Proteins · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6YLO · PDBe 6YLO

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