MolNFT v1 · #170836 · protein + DNA
VCAM4I restriction endonuclease in the presence of 5MC-modified ssdna
6YKF: “VCAM4I restriction endonuclease in the presence of 5MC-modified ssdna”. X-ray diffraction, 2 ligands (SO4, CL). MolNFT v1 #170836 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YKF
- Type
- protein + DNA
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A344KQF3
- Ligands
- SO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 309 | — | A0A344KQF3 |
| B | — | dna | 5 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 11 copies · chains A, B
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YKF · VcaM4I restriction endonuclease in the presence of 5mC-modified ssDNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A344KQF3
- Elsewhere: RCSB PDB 6YKF · PDBe 6YKF · UniProt A0A344KQF3
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