MolNFT v1 · #170816 · protein

Crystal structure of a complex between glycosylated NKP30 and its deglycosylated tumour ligand B7-H6

6YJP: “Crystal structure of a complex between glycosylated NKP30 and its deglycosylated tumour ligand B7-H6”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #170816 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6YJP
Type: protein
Length: 875 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q68D85, O14931
Ligands: NAG

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	—	protein	225	—	Q68D85
D	—	protein	214	—	Q68D85
A, B	—	protein	111	—	O14931
E	—	protein	214	—	Q68D85

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains C, E, D, A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6YJP · Crystal structure of a complex between glycosylated NKp30 and its deglycosylated tumour… · the same entry in another collection · chain E against E, TM-score 1.00
Q68D85 · AlphaFold monomer V2.0 prediction for natural cytotoxicity triggering receptor 3 ligand 1… · a predicted model of the same protein · chain E against A, TM-score 0.97
O14931 · AlphaFold monomer V2.0 prediction for natural cytotoxicity triggering receptor 3 (O14931) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q68D85
Every structure of UniProt O14931
Elsewhere: RCSB PDB 6YJP · PDBe 6YJP · UniProt Q68D85 · UniProt O14931

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