MolNFT v1 · #170807 · protein
Crystal structure of MINDY1 mutant-Y114F
6YJG · Ubiquitin carboxyl-terminal hydrolase MINDY1: “Crystal structure of MINDY1 mutant-Y114F”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #170807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YJG
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin carboxyl-terminal hydrolase MINDY1
- EC
- 3.4.19.12
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin carboxyl-terminal hydrolase MINDY1 (EC 3.4.19.12) | protein | 259 | 34% helix, 20% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.51 | 0.76 | 24 | empty |
| 2 | 71 | 0.32 | 0.75 | 22 | empty |
Compared structures
- 6YJG · Crystal structure of MINDY1 mutant-Y114F · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YJG · PDBe 6YJG
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