MolNFT v1 · #170782 · protein

Crystal structure of bacillus subtilis msmx ATPase

6YIR · Oligosaccharides import ATP-binding protein msmx: “Crystal structure of bacillus subtilis msmx ATPase”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.53). MolNFT v1 #170782 on GenesisL1: 3D structure, binding…

PDB: 6YIR
Type: protein
Length: 366 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oligosaccharides import ATP-binding protein msmx
EC: 7.5.2.-
UniProt: P94360
Ligands: SO4
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oligosaccharides import ATP-binding protein msmx (EC 7.5.2.-)	protein	366	30% helix, 32% strand	P94360

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.53	0.78	23	empty
2	61	0.38	0.79	17	empty
3	54	0.26	0.73	13	empty

Compared structures

6YIR · Crystal structure of Bacillus subtilis MsmX ATPase · the same entry in another collection · chain A against A, TM-score 1.00
P94360 · AlphaFold monomer V2.0 prediction for oligosaccharides import ATP- binding protein msmx… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P94360
Elsewhere: RCSB PDB 6YIR · PDBe 6YIR · UniProt P94360

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