MolNFT v1 · #170742 · protein

Crystal structure of cnfy from yersinia pseudotuberculosis - N- terminal fragment comprising residues 1-704

6YHL · Cytotoxic necrotizing factor: “Crystal structure of cnfy from yersinia pseudotuberculosis - N- terminal fragment comprising residues 1-704”. X-ray diffraction, 20 pockets (best druggability 0.87). MolNFT v1 #170742 on GenesisL1: 3D…

PDB: 6YHL
Type: protein
Length: 1,393 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytotoxic necrotizing factor
UniProt: A0A0N9JNY6
Pockets: 20 · best druggability 0.87

Structure

x-ray diffraction · 2 distinct chains · 35% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytotoxic necrotizing factor	protein	695	35% helix, 19% strand	A0A0N9JNY6
B	Cytotoxic necrotizing factor	protein	698	36% helix, 19% strand	A0A0N9JNY6

Pockets

20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	531	0.87	0.93	60	empty
2	551	0.85	0.91	69	empty
3	706	0.81	0.85	77	empty
4	1177	0.80	0.82	95	empty
5	664	0.73	0.80	63	empty

Interfaces

1 interface between chains.

A–B · 1760 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

6YHL · Crystal structure of CNFy from Yersinia pseudotuberculosis - N-terminal fragment… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0N9JNY6
Elsewhere: RCSB PDB 6YHL · PDBe 6YHL · UniProt A0A0N9JNY6

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