MolNFT v1 · #170738 · protein
X-ray structure of flavobacterium johnsoniae chitobiase (FJGH20)
6YHH · Beta-N-acetylglucosaminidase-like protein glycoside…: “X-ray structure of flavobacterium johnsoniae chitobiase (FJGH20)”. X-ray diffraction, 14 pockets (best druggability 0.87). MolNFT v1 #170738 on GenesisL1: 3D structure, binding…
- PDB
- 6YHH
- Type
- protein
- Length
- 1,310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-N-acetylglucosaminidase-like protein glycoside hydrolase family 20
- EC
- 3.2.1.52
- UniProt
- A5FB64
- Pockets
- 14 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-N-acetylglucosaminidase-like protein glycoside hydrolase family 20 (EC 3.2.1.52) | protein | 655 | 44% helix, 16% strand | A5FB64 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 881 | 0.87 | 0.89 | 97 | empty |
| 2 | 1170 | 0.80 | 0.81 | 87 | empty |
| 3 | 235 | 0.68 | 0.85 | 38 | TRS |
| 4 | 240 | 0.68 | 0.84 | 39 | TRS |
| 5 | 56 | 0.67 | 0.95 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 2192 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 6YHH · X-ray Structure of Flavobacterium johnsoniae chitobiase (FjGH20) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5FB64
- Elsewhere: RCSB PDB 6YHH · PDBe 6YHH · UniProt A5FB64
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