MolNFT v1 · #170657 · protein
Arabidopsis thaliana glutamate dehydrogenase isoform 1 in complex with NAD
6YEI: “Arabidopsis thaliana glutamate dehydrogenase isoform 1 in complex with NAD”. X-ray diffraction, 3 ligands (NAD, AKG, K). MolNFT v1 #170657 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YEI
- Type
- protein
- Length
- 2,445 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q43314
- Ligands
- NAD, AKG, K
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 409 | — | Q43314 |
| B | — | protein | 406 | — | Q43314 |
| C | — | protein | 407 | — | Q43314 |
| D | — | protein | 407 | — | Q43314 |
| E | — | protein | 406 | — | Q43314 |
| F | — | protein | 410 | — | Q43314 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 6 copies · chains A, B, C, D, E, F
- AKG · 2-oxoglutaric acid · ligand · chains F
- K · Potassium ion · metal · 6 copies · chains A, B, C, D, E, F
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 15 copies · chains A, E, B, D, C, F
- MRD · (4R)-2-methylpentane-2,4-diol · additive · 5 copies · chains A, B, C, D, E
- EDO · 1,2-ethanediol · additive · 2 copies · chains D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YEI · Arabidopsis thaliana glutamate dehydrogenase isoform 1 in complex with NAD · the same entry in another collection · chain F against F, TM-score 1.00
- Q43314 · AlphaFold monomer V2.0 prediction for glutamate dehydrogenase 1 (Q43314) · a predicted model of the same protein · chain F against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q43314
- Elsewhere: RCSB PDB 6YEI · PDBe 6YEI · UniProt Q43314
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