MolNFT v1 · #170632 · protein
P146A variant of beta-phosphoglucomutase from lactococcus lactis in complex with glucose 6-phosphate and trifluoromagnesate
6YDJ: “P146A variant of beta-phosphoglucomutase from lactococcus lactis in complex with glucose 6-phosphate and…”. X-ray diffraction, 4 ligands (MGF, BG6, MG). MolNFT v1 #170632 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YDJ
- Type
- protein
- Length
- 218 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P71447
- Ligands
- MGF, BG6, MG, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 218 | — | P71447 |
Ligands and binding sites
- MGF · Trifluoromagnesate · ligand · chains A
- BG6 · 6-O-phosphono-beta-D-glucopyranose · sugar · chains A
- MG · Magnesium ion · metal · chains A
- NA · Sodium ion · metal
- EDO · 1,2-ethanediol · additive · chains A
- PDO · 1,3-propandiol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YDJ · P146A variant of beta-phosphoglucomutase from Lactococcus lactis in complex with glucose… · the same entry in another collection · chain A against A, TM-score 1.00
- P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71447
- Elsewhere: RCSB PDB 6YDJ · PDBe 6YDJ · UniProt P71447
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