MolNFT v1 · #170574 · protein
Crystal structure of a native bcse (349-523) rq complex with C-di-gmp and ATP bound
6YBU: “Crystal structure of a native bcse (349-523) rq complex with C-di-gmp and ATP bound”. X-ray diffraction, 3 ligands (C2E, ATP, MG). MolNFT v1 #170574 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YBU
- Type
- protein
- Length
- 1,742 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0B1KWQ0, J7QAC9, P37657
- Ligands
- C2E, ATP, MG
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, G | — | protein | 240 | — | A0A0B1KWQ0 |
| C | — | protein | 29 | — | J7QAC9 |
| D | — | protein | 29 | — | J7QAC9 |
| E | — | protein | 168 | — | P37657 |
| F, K | — | protein | 166 | — | P37657 |
| H | — | protein | 239 | — | A0A0B1KWQ0 |
| I | — | protein | 30 | — | J7QAC9 |
| J | — | protein | 33 | — | J7QAC9 |
| L | — | protein | 162 | — | P37657 |
Ligands and binding sites
- C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 8 copies · chains E, F, K, L
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, B, G, H
- MG · Magnesium ion · metal · 4 copies · chains A, B, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YBU · Crystal structure of a native BcsE (349-523) RQ complex with c-di-GMP and ATP bound · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B1KWQ0
- Every structure of UniProt J7QAC9
- Every structure of UniProt P37657
- Elsewhere: RCSB PDB 6YBU · PDBe 6YBU · UniProt A0A0B1KWQ0 · UniProt J7QAC9 · UniProt P37657
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