MolNFT v1 · #170556 · protein
Crystal structure of a native bcse (217-523) - bcsr-bcsq (R156E mutant) complex with C-di-gmp and ATP bound
6YBB: “Crystal structure of a native bcse (217-523) - bcsr-bcsq (R156E mutant) complex with C-di-gmp and ATP bound”. X-ray diffraction, 3 ligands (C2E, ATP, MG). MolNFT v1 #170556 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6YBB
- Type
- protein
- Length
- 1,118 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0B1KWQ0, J7QAC9, P37657
- Ligands
- C2E, ATP, MG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 243 | — | A0A0B1KWQ0 |
| C | — | protein | 22 | — | J7QAC9 |
| D | — | protein | 51 | — | J7QAC9 |
| E | — | protein | 279 | — | P37657 |
| F | — | protein | 280 | — | P37657 |
Ligands and binding sites
- C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 4 copies · chains E, F
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YBB · Crystal structure of a native BcsE (217-523) - BcsR-BcsQ (R156E mutant) complex with… · the same entry in another collection · chain F against F, TM-score 1.00
- P37657 · AlphaFold monomer V2.0 prediction for cyclic di-gmp binding protein bcse (P37657) · a predicted model of the same protein · chain E against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B1KWQ0
- Every structure of UniProt J7QAC9
- Every structure of UniProt P37657
- Elsewhere: RCSB PDB 6YBB · PDBe 6YBB · UniProt A0A0B1KWQ0 · UniProt J7QAC9 · UniProt P37657
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