GL1X · GenesisL1 explorer

MolNFT v1 · #170556 · protein

Crystal structure of a native bcse (217-523) - bcsr-bcsq (R156E mutant) complex with C-di-gmp and ATP bound

6YBB: “Crystal structure of a native bcse (217-523) - bcsr-bcsq (R156E mutant) complex with C-di-gmp and ATP bound”. X-ray diffraction, 3 ligands (C2E, ATP, MG). MolNFT v1 #170556 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
6YBB
Type
protein
Length
1,118 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
A0A0B1KWQ0, J7QAC9, P37657
Ligands
C2E, ATP, MG

Structure

x-ray diffraction · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein243—A0A0B1KWQ0
C—protein22—J7QAC9
D—protein51—J7QAC9
E—protein279—P37657
F—protein280—P37657

Ligands and binding sites

  • C2E · 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10, 12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3, 2-D:3',2'-J][1,3,7,9,2, 8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) · ligand · 4 copies · chains E, F
  • ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
  • MG · Magnesium ion · metal · 2 copies · chains A, B
  • GOL · Glycerol · additive · 2 copies · chains E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YBB · Crystal structure of a native BcsE (217-523) - BcsR-BcsQ (R156E mutant) complex with… · the same entry in another collection · chain F against F, TM-score 1.00
  • P37657 · AlphaFold monomer V2.0 prediction for cyclic di-gmp binding protein bcse (P37657) · a predicted model of the same protein · chain E against A, TM-score 0.92

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.