MolNFT v1 · #170539 · protein

Hydroxynitrile lyase from hevea brasiliensis, room temperature structure

6YAS · Protein (hydroxynitrile lyase): “Hydroxynitrile lyase from hevea brasiliensis, room temperature structure”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.73). MolNFT v1 #170539 on GenesisL1: 3D structure, binding…

PDB: 6YAS
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (hydroxynitrile lyase)
EC: 4.1.2.39
UniProt: P52704
Ligands: SO4
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (hydroxynitrile lyase) (EC 4.1.2.39)	protein	256	41% helix, 19% strand	P52704

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.73	0.98	17	empty
2	57	0.34	0.77	13	empty

Compared structures

6YAS · Hydroxynitrile lyase from hevea brasiliensis, room temperature structure · the same entry in another collection · chain A against A, TM-score 1.00
P52704 · AlphaFold monomer V2.0 prediction for (S)-hydroxynitrile lyase (P52704) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52704
Elsewhere: RCSB PDB 6YAS · PDBe 6YAS · UniProt P52704

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