MolNFT v1 · #170502 · protein
Crystal structure of tswv glycoprotein N ectodomain (sgn)
6Y9M: “Crystal structure of tswv glycoprotein N ectodomain (sgn)”. X-ray diffraction, 5 ligands (NAG, BMA, FUC). MolNFT v1 #170502 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y9M
- Type
- protein
- Length
- 791 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A3G1GK10
- Ligands
- NAG, BMA, FUC, PO4, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 195 | — | A0A3G1GK10 |
| B | — | protein | 201 | — | A0A3G1GK10 |
| C | — | protein | 196 | — | A0A3G1GK10 |
| D | — | protein | 199 | — | A0A3G1GK10 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 16 copies · chains A, B, C, D
- BMA · beta-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · chains B
- PO4 · Phosphate ion · ion · 5 copies · chains A, C, B
- SO4 · Sulfate ion · ion · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y9M · Crystal structure of TSWV glycoprotein N ectodomain (sGn) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3G1GK10
- Elsewhere: RCSB PDB 6Y9M · PDBe 6Y9M · UniProt A0A3G1GK10
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