MolNFT v1 · #170498 · protein
Crystal structure of putative ancestral haloalkane dehalogenase ANCHLD5 (node 5)
6Y9G: “Crystal structure of putative ancestral haloalkane dehalogenase ANCHLD5 (node 5)”. X-ray diffraction, 5 pockets (best druggability 0.72). MolNFT v1 #170498 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y9G
- Type
- protein
- Length
- 570 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ancestral haloalkane dehalogenase ANCHLD5
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ancestral haloalkane dehalogenase ANCHLD5 | protein | 285 | 45% helix, 21% strand | — |
| B | Ancestral haloalkane dehalogenase ANCHLD5 | protein | 285 | 46% helix, 21% strand | — |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.72 | 0.85 | 38 | empty |
| 2 | 212 | 0.64 | 0.83 | 30 | empty |
| 3 | 253 | 0.54 | 0.77 | 35 | empty |
| 4 | 83 | 0.39 | 0.77 | 15 | empty |
| 5 | 79 | 0.35 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 284 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6Y9G · Crystal structure of putative ancestral haloalkane dehalogenase AncHLD5 (node 5) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6Y9G · PDBe 6Y9G
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