MolNFT v1 · #170475 · protein
Crystal structure of snap-tag labeled with a benzyl- tetramethylrhodamine fluorophore
6Y8P: “Crystal structure of snap-tag labeled with a benzyl- tetramethylrhodamine fluorophore”. X-ray diffraction, 2 ligands (OGQ, ZN). MolNFT v1 #170475 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y8P
- Type
- protein
- Length
- 158 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E5BBQ0
- Ligands
- OGQ, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 158 | — | E5BBQ0 |
Ligands and binding sites
- OGQ · [9-[2-carboxy-5-[(4-methylphenyl) methylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium · ligand · chains A
- ZN · Zinc ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y8P · Crystal structure of SNAP-tag labeled with a benzyl-tetramethylrhodamine fluorophore · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5BBQ0
- Elsewhere: RCSB PDB 6Y8P · PDBe 6Y8P · UniProt E5BBQ0
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