MolNFT v1 · #170474 · protein
Mycobacterium smegmatis gyrb 22KDA ATPase sub-domain in complex with novobiocin
6Y8O: “Mycobacterium smegmatis gyrb 22KDA ATPase sub-domain in complex with novobiocin”. X-ray diffraction, 2 ligands (NOV, NA). MolNFT v1 #170474 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y8O
- Type
- protein
- Length
- 374 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0C559
- Ligands
- NOV, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 188 | — | P0C559 |
| B | — | protein | 186 | — | P0C559 |
Ligands and binding sites
- NOV · Novobiocin · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 5 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
- ACT · Acetate ion · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y8O · Mycobacterium smegmatis GyrB 22kDa ATPase sub-domain in complex with novobiocin · the same entry in another collection · chain A against A, TM-score 1.00
- P0C559 · AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (P0C559) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C559
- Elsewhere: RCSB PDB 6Y8O · PDBe 6Y8O · UniProt P0C559
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