MolNFT v1 · #170374 · protein
Ectodomain of X-31 haemagglutinin at pH 5 (state I)
6Y5H: “Ectodomain of X-31 haemagglutinin at pH 5 (state I)”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #170374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y5H
- Type
- protein
- Length
- 1,470 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P03437
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 318 | — | P03437 |
| B, D, F | — | protein | 172 | — | P03437 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 24 copies · chains A, E, B, C, D, F
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- BMA · beta-D-mannopyranose · sugar · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y5H · Ectodomain of X-31 Haemagglutinin at pH 5 (State I) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03437
- Elsewhere: RCSB PDB 6Y5H · PDBe 6Y5H · UniProt P03437
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