MolNFT v1 · #170220 · protein
Cytochrome C in complex with phosphonato-CALIX[6]ARENE and sulfonato- CALIX[8]ARENE
6Y0J: “Cytochrome C in complex with phosphonato-CALIX[6]ARENE and sulfonato- CALIX[8]ARENE”. X-ray diffraction, 3 ligands (HEC, 7AZ, EVB). MolNFT v1 #170220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y0J
- Type
- protein
- Length
- 427 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00044
- Ligands
- HEC, 7AZ, EVB
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | — | protein | 107 | — | P00044 |
| C | — | protein | 106 | — | P00044 |
Ligands and binding sites
- HEC · Heme C · ligand · 4 copies · chains A, B, C, D
- 7AZ · phosphonato-calix[6]arene · ligand · 4 copies · chains B, C, D
- EVB · sulfonato-calix[8]arene · ligand · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y0J · Cytochrome c in complex with phosphonato-calix[6]arene and sulfonato-calix[8]arene · the same entry in another collection · chain D against D, TM-score 1.00
- P00044 · AlphaFold monomer V2.0 prediction for cytochrome C isoform 1 (P00044) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00044
- Elsewhere: RCSB PDB 6Y0J · PDBe 6Y0J · UniProt P00044
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