MolNFT v1 · #169972 · protein
Crystal structure of nhp VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold
6XSN: “Crystal structure of nhp VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold”. X-ray diffraction, 3 ligands (NAG, NA, SCN). MolNFT v1 #169972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XSN
- Type
- protein
- Length
- 476 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, NA, SCN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 214 | — | — |
| L | — | protein | 214 | — | — |
| C | — | protein | 48 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains C
- NA · Sodium ion · metal · chains H, L, C
- SCN · Thiocyanate ion · ion · 3 copies · chains H, L
- EDO · 1,2-ethanediol · additive · 4 copies · chains H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XSN · Crystal structure of NHP VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6XSN · PDBe 6XSN
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