MolNFT v1 · #169944 · RNA
Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of pseudorabies virus
6XRQ: “Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region…”. X-ray diffraction, 2 ligands (V8A, K). MolNFT v1 #169944 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XRQ
- Type
- RNA
- Length
- 28 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- V8A, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | — | rna | 14 | — | — |
Ligands and binding sites
- V8A · 2,7-bis[3-(morpholin-4-yl)propyl]-4,9-bis{[3-(morpholin-4-yl)propyl]amino}benzo[lmn][3, 8]phenanthroline-1,3,6,8(2H,7H)-tetrone · ligand · 2 copies · chains B, A
- K · Potassium ion · metal · 3 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XRQ · Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6XRQ · PDBe 6XRQ
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