MolNFT v1 · #169823 · DNA
Self-assembly of a 3D DNA crystal lattice (4X6 junction version) containing the J30 immobile holliday junction
6XO7: “Self-assembly of a 3D DNA crystal lattice (4X6 junction version) containing the J30 immobile holliday junction”. X-ray diffraction, 2 ligands (CAC, MG). MolNFT v1 #169823 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XO7
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- CAC, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | dna | 12 | — | — |
| B | — | dna | 9 | — | — |
| C | — | dna | 6 | — | — |
| D | — | dna | 15 | — | — |
Ligands and binding sites
- CAC · Cacodylate ion · metal · 2 copies · chains B, C, D
- MG · Magnesium ion · metal · 2 copies · chains D, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XO7 · Self-assembly of a 3D DNA crystal lattice (4x6 junction version) containing the J30… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6XO7 · PDBe 6XO7
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