MolNFT v1 · #169818 · protein

Structural characterization of beta cyanoalanine synthase from tetranychus urticae (two-spotted spider mite)

6XO2 · Beta-cyanoalanine synthase: “Structural characterization of beta cyanoalanine synthase from tetranychus urticae (two-spotted spider mite)”. X-ray diffraction, 1 ligand (PLP), 1 pocket (best druggability 0.70). MolNFT v1 #169818 on…

PDB: 6XO2
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-cyanoalanine synthase
UniProt: T1KF23
Ligands: PLP
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-cyanoalanine synthase	protein	294	43% helix, 18% strand	T1KF23

Ligands and binding sites

PLP · Pyridoxal-5'-phosphate · ligand · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	411	0.70	0.82	59	PLP, ACT

Modifications

Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).

Compared structures

6XO2 · Structural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt T1KF23
Elsewhere: RCSB PDB 6XO2 · PDBe 6XO2 · UniProt T1KF23

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