MolNFT v1 · #169760 · protein
Crystal structure of vanillin bound to co-LSD4 from sphingobium sp. strain syk-6
6XM9: “Crystal structure of vanillin bound to co-LSD4 from sphingobium sp. strain syk-6”. X-ray diffraction, 3 ligands (V55, CO, MG). MolNFT v1 #169760 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XM9
- Type
- protein
- Length
- 479 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G2IQT9
- Ligands
- V55, CO, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 479 | — | G2IQT9 |
Ligands and binding sites
- V55 · 4-hydroxy-3-methoxybenzaldehyde · ligand · chains A
- CO · Cobalt (II) ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · 2 copies
- DMS · Dimethyl sulfoxide · additive · 8 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XM9 · Crystal structure of vanillin bound to Co-LSD4 from Sphingobium sp. strain SYK-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2IQT9
- Elsewhere: RCSB PDB 6XM9 · PDBe 6XM9 · UniProt G2IQT9
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