MolNFT v1 · #169710 · protein
R. capsulatus cyt BC1 with one fes protein in B position and one in C position (CIII2 B-C)
6XKU: “R. capsulatus cyt BC1 with one fes protein in B position and one in C position (CIII2 B-C)”. Electron microscopy, 2 ligands (HEC, FES). MolNFT v1 #169710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XKU
- Type
- protein
- Length
- 1,678 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D5ANZ2, D5ANZ3, D5ANZ4
- Ligands
- HEC, FES
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E, R | — | protein | 181 | — | D5ANZ2 |
| C, P | — | protein | 423 | — | D5ANZ3 |
| D, Q | — | protein | 235 | — | D5ANZ4 |
Ligands and binding sites
- HEC · Heme C · ligand · 6 copies · chains C, D, P, Q
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains E, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XKU · R. capsulatus cyt bc1 with one FeS protein in b position and one in c position (CIII2 b-c) · the same entry in another collection · chain Q against Q, TM-score 1.00
- D5ANZ3 · AlphaFold monomer V2.0 prediction for cytochrome B (D5ANZ3) · a predicted model of the same protein · chain P against A, TM-score 0.97
- D5ANZ4 · AlphaFold monomer V2.0 prediction for cytochrome C1 (D5ANZ4) · a predicted model of the same protein · chain D against A, TM-score 0.97
- D5ANZ2 · AlphaFold monomer V2.0 prediction for ubiquinol-cytochrome C reductase iron-sulfur… · a predicted model of the same protein · chain E against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5ANZ2
- Every structure of UniProt D5ANZ3
- Every structure of UniProt D5ANZ4
- Elsewhere: RCSB PDB 6XKU · PDBe 6XKU · UniProt D5ANZ2 · UniProt D5ANZ3 · UniProt D5ANZ4
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