MolNFT v1 · #169665 · protein
Structure of the sm protein VPS45
6XJL: “Structure of the sm protein VPS45”. X-ray diffraction, 5 pockets (best druggability 0.74). MolNFT v1 #169665 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XJL
- Type
- protein
- Length
- 536 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VPS45
- UniProt
- G0S539
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VPS45 | protein | 536 | 48% helix, 15% strand | G0S539 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 834 | 0.74 | 0.78 | 124 | empty |
| 2 | 226 | 0.64 | 0.83 | 28 | empty |
| 3 | 109 | 0.46 | 0.79 | 20 | empty |
| 4 | 51 | 0.46 | 0.85 | 17 | empty |
| 5 | 98 | 0.36 | 0.75 | 18 | empty |
Compared structures
- 6XJL · Structure of the SM protein Vps45 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0S539
- Elsewhere: RCSB PDB 6XJL · PDBe 6XJL · UniProt G0S539
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