MolNFT v1 · #169414 · protein
Structure of danaus plexippus poxin cgamp nuclease
6XB6: “Structure of danaus plexippus poxin cgamp nuclease”. X-ray diffraction, 5 pockets (best druggability 0.69). MolNFT v1 #169414 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XB6
- Type
- protein
- Length
- 478 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Poxin
- UniProt
- A0A212FM92
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Poxin | protein | 239 | 8% helix, 45% strand | A0A212FM92 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.69 | 0.79 | 46 | empty |
| 2 | 458 | 0.67 | 0.79 | 47 | empty |
| 3 | 265 | 0.59 | 0.79 | 40 | empty |
| 4 | 97 | 0.36 | 0.75 | 20 | empty |
| 5 | 73 | 0.31 | 0.74 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 1300 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 6XB6 · Structure of Danaus plexippus poxin cGAMP nuclease · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A212FM92
- Elsewhere: RCSB PDB 6XB6 · PDBe 6XB6 · UniProt A0A212FM92
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