MolNFT v1 · #16930 · protein
Crystal analysis of chorismate mutase from thermus thermophilus.
1ODE: “Crystal analysis of chorismate mutase from thermus thermophilus.”. X-ray diffraction, 3 pockets (best druggability 0.63). MolNFT v1 #16930 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ODE
- Type
- protein
- Length
- 346 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chorismate mutase
- EC
- 5.4.99.5
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chorismate mutase (EC 5.4.99.5) | protein | 116 | 31% helix, 28% strand | — |
| B, C | Chorismate mutase (EC 5.4.99.5) | protein | 115 | 30% helix, 30% strand | — |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.63 | 0.83 | 27 | empty |
| 2 | 194 | 0.56 | 0.79 | 26 | empty |
| 3 | 187 | 0.53 | 0.79 | 28 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1073 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 1036 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 994 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1ODE · Crystal Analysis Of Chorismate Mutase From Thermus Thermophilus. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ODE · PDBe 1ODE
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