MolNFT v1 · #16926 · protein
N-terminal of sialoadhesin in complex with me-a-9-N- (biphenyl-4-carbonyl)-amino-9-deoxy-NEU5AC (bip compound)
1ODA: “N-terminal of sialoadhesin in complex with me-a-9-N- (biphenyl-4-carbonyl)-amino-9-deoxy-NEU5AC (bip compound)”. X-ray diffraction, 1 ligand (BDU). MolNFT v1 #16926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ODA
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sialoadhesin
- UniProt
- Q62230
- Ligands
- BDU
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sialoadhesin | protein | 116 | 3% helix, 46% strand | Q62230 |
Ligands and binding sites
- BDU · Me-A-9-N-(biphenyl-4-carbonyl)-amino-9-deoxy-neu5ac · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1ODA · N-terminal of Sialoadhesin in complex with Me-a-9-N-(biphenyl-4-carbonyl)-amino-9-deoxy-Ne… · the same entry in another collection · chain A against A, TM-score 1.00
- Q62230 · AlphaFold monomer V2.0 prediction for sialoadhesin (Q62230) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q62230
- Elsewhere: RCSB PDB 1ODA · PDBe 1ODA · UniProt Q62230
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