MolNFT v1 · #169116 · protein + RNA
Crystal structure of NSP15 endoribonuclease from SARS cov-2 in the complex with the product nucleotide gpu.
6X1B: “Crystal structure of NSP15 endoribonuclease from SARS cov-2 in the complex with the product nucleotide gpu.”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #169116 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X1B
- Type
- protein + RNA
- Length
- 698 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 348 | — | P0DTD1 |
| B | — | protein | 346 | — | P0DTD1 |
| D, F | — | rna | 2 | — | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, D, B, F
- EDO · 1,2-ethanediol · additive · 3 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X1B · Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 6X1B · PDBe 6X1B · UniProt P0DTD1
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