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MolNFT v1 · #169015 · protein

Crystal structure of wild type class D beta-lactamase from clostridium difficile 630

6WY4: “Crystal structure of wild type class D beta-lactamase from clostridium difficile 630”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #169015 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6WY4
Type
protein
Length
1,004 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q188Q3
Ligands
NA

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein248—Q188Q3
B—protein248—Q188Q3
C, D—protein254—Q188Q3

Ligands and binding sites

  • NA · Sodium ion · metal · chains D
  • PEG · Di(hydroxyethyl)ether · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6WY4 · Crystal Structure of Wild Type Class D beta-lactamase from Clostridium difficile 630 · the same entry in another collection · chain A against A, TM-score 1.00

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