MolNFT v1 · #16891 · protein
Tryparedoxin II from C.FASCICULATA solved by mr
1OC9: “Tryparedoxin II from C.FASCICULATA solved by mr”. X-ray diffraction, 2 pockets (best druggability 0.39). MolNFT v1 #16891 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1OC9
- Type
- protein
- Length
- 297 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tryparedoxin II
- UniProt
- O77093
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tryparedoxin II | protein | 150 | 36% helix, 23% strand | O77093 |
| B | Tryparedoxin II | protein | 147 | 34% helix, 22% strand | O77093 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.39 | 0.76 | 21 | empty |
| 2 | 71 | 0.31 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 648 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1OC9 · TRYPAREDOXIN II FROM C.FASCICULATA solved by MR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O77093
- Elsewhere: RCSB PDB 1OC9 · PDBe 1OC9 · UniProt O77093
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