MolNFT v1 · #168895 · protein

Crystal structure of S. pombe RAI1 in complex with 3'-fadp

6WUG: “Crystal structure of S. pombe RAI1 in complex with 3'-fadp”. X-ray diffraction, 2 ligands (UBG, MG). MolNFT v1 #168895 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WUG
Type: protein
Length: 312 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O13836
Ligands: UBG, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	312	—	O13836

Ligands and binding sites

UBG · [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name) · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6WUG · Crystal Structure of S. pombe Rai1 in complex with 3'-FADP · the same entry in another collection · chain A against A, TM-score 1.00
O13836 · AlphaFold monomer V2.0 prediction for decapping nuclease DIN1 (O13836) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O13836
Elsewhere: RCSB PDB 6WUG · PDBe 6WUG · UniProt O13836

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.