MolNFT v1 · #168794 · DNA
Self-assembly of a 3D DNA crystal lattice (4X5 duplex version) containing the J31 immobile holliday junction
6WRC · DNA (5'- D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*GP*CP*CP*…: “Self-assembly of a 3D DNA crystal lattice (4X5 duplex version) containing the J31 immobile holliday junction”. X-ray diffraction. MolNFT v1 #168794 on GenesisL1: 3D…
- PDB
- 6WRC
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*GP*CP*CP*AP*CP*TP*CP*A)- 3'); DNA…
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*GP*CP*CP*AP*CP*TP*CP*A)- 3') | dna | 21 | — | — |
| B | DNA (5'-D(P*CP*GP*TP*CP*T)-3') | dna | 5 | — | — |
| C | DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3') | dna | 9 | — | — |
| D | DNA (5'-D(P*GP*GP*TP*CP*TP*GP*C)-3') | dna | 7 | — | — |
Interfaces
5 interfaces between chains.
- A–D · 345 Ų buried · 20 hydrogen bonds · nucleic-nucleic
- A–C · 341 Ų buried · 23 hydrogen bonds · nucleic-nucleic
- A–B · 242 Ų buried · 19 hydrogen bonds · nucleic-nucleic
- B–C · 105 Ų buried · 5 hydrogen bonds · nucleic-nucleic
- B–D · 88 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 6WRC · Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J31… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WRC · PDBe 6WRC
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