MolNFT v1 · #168740 · protein
Structure of the SARS-cov-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment
6WPS: “Structure of the SARS-cov-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment”. Electron microscopy, 4 ligands (NAG, MAN, BMA). MolNFT v1 #168740 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6WPS
- Type
- protein
- Length
- 3,540 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, MAN, BMA, FUC
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E | — | protein | 955 | — | P0DTC2 |
| H, C, F | — | protein | 123 | — | — |
| L, D, G | — | protein | 102 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 63 copies · chains A, L, B, D, E, G
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains L, D, G
- BMA · beta-D-mannopyranose · sugar · 3 copies
- FUC · alpha-L-fucopyranose · sugar · 3 copies · chains H, L, C, D, F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WPS · Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 6WPS · PDBe 6WPS · UniProt P0DTC2
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