MolNFT v1 · #168731 · protein + DNA
Structure of HIV-1 reverse transcriptase (rt) in complex with dsdna and D4T
6WPJ: “Structure of HIV-1 reverse transcriptase (rt) in complex with dsdna and D4T”. X-ray diffraction, 3 ligands (D4T, MG, SO4). MolNFT v1 #168731 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WPJ
- Type
- protein + DNA
- Length
- 992 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04585
- Ligands
- D4T, MG, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 557 | — | P04585 |
| B | — | protein | 394 | — | P04585 |
| P | — | dna | 18 | — | — |
| T | — | dna | 23 | — | — |
Ligands and binding sites
- D4T · 2',3'-dehydro-2',3'-deoxy-thymidine 5'-triphosphate · ligand · chains A, P, T
- MG · Magnesium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WPJ · Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and d4T · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04585
- Elsewhere: RCSB PDB 6WPJ · PDBe 6WPJ · UniProt P04585
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