MolNFT v1 · #168730 · protein + RNA

Crystal structure of NOP9 in complex with ITS1 RNA

6WPI: “Crystal structure of NOP9 in complex with ITS1 RNA”. X-ray diffraction, 1 ligand (TCE). MolNFT v1 #168730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WPI
Type: protein + RNA
Length: 614 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P47077
Ligands: TCE

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	548	—	P47077
B	—	rna	39	—	—
C	—	rna	27	—	—

Ligands and binding sites

TCE · 3,3',3''-phosphanetriyltripropanoic acid · ligand · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6WPI · Crystal structure of Nop9 in complex with ITS1 RNA · the same entry in another collection · chain A against A, TM-score 1.00
P47077 · AlphaFold monomer V2.0 prediction for nucleolar protein 9 (P47077) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47077
Elsewhere: RCSB PDB 6WPI · PDBe 6WPI · UniProt P47077

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.