MolNFT v1 · #168687 · protein
Structure of rava (LPP0008) E38A/K39A surface entropy reduction mutant
6WO6: “Structure of rava (LPP0008) E38A/K39A surface entropy reduction mutant”. X-ray diffraction, 5 pockets (best druggability 0.45). MolNFT v1 #168687 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WO6
- Type
- protein
- Length
- 654 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rava
- UniProt
- A0A3A6VZ03
- Pockets
- 5 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rava | protein | 328 | 70% helix, 0% strand | A0A3A6VZ03 |
| B | Rava | protein | 326 | 72% helix, 0% strand | A0A3A6VZ03 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.45 | 0.75 | 24 | empty |
| 2 | 186 | 0.43 | 0.73 | 26 | empty |
| 3 | 81 | 0.40 | 0.78 | 21 | empty |
| 4 | 74 | 0.33 | 0.74 | 12 | empty |
| 5 | 57 | 0.30 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 416 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6WO6 · Structure of RavA (lpp0008) E38A/K39A surface entropy reduction mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3A6VZ03
- Elsewhere: RCSB PDB 6WO6 · PDBe 6WO6 · UniProt A0A3A6VZ03
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