MolNFT v1 · #168664 · protein
Menin bound to inhibitor M-808
6WNH: “Menin bound to inhibitor M-808”. X-ray diffraction, 2 ligands (7PR, 7MM), 3 pockets (best druggability 0.68). MolNFT v1 #168664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WNH
- Type
- protein
- Length
- 481 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Menin
- UniProt
- O00255
- Ligands
- 7PR, 7MM
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Menin | protein | 481 | 55% helix, 7% strand | O00255 |
Ligands and binding sites
- 7PR · praseodymium triacetate · ligand · 5 copies · chains A
- 7MM · Methyl [(1S,2R)-2-{(1S)-2-(azetidin-1-yl)-1-(3-fluorophenyl)-1-[1-({1-[4-({1-[4-(piperidin-1-yl) butanoyl]azetidin-3-yl}sulfonyl)phenyl]azetidin-3-yl}methyl)piperidin-4-yl]ethyl}cyclopentyl]carbamate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 631 | 0.68 | 0.77 | 61 | 7MM |
| 2 | 84 | 0.36 | 0.76 | 24 | empty |
| 3 | 80 | 0.34 | 0.76 | 20 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00255
- Elsewhere: RCSB PDB 6WNH · PDBe 6WNH · UniProt O00255
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