MolNFT v1 · #168633 · protein + DNA

ZNF410 zinc fingers 1-5 with 17 mer blunt DNA oligonucleotide

6WMI: “ZNF410 zinc fingers 1-5 with 17 mer blunt DNA oligonucleotide”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #168633 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WMI
Type: protein + DNA
Length: 360 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q86VK4
Ligands: ZN

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	—	protein	146	—	Q86VK4
B, E	—	dna	17	—	—
C, F	—	dna	17	—	—

Ligands and binding sites

ZN · Zinc ion · metal · 10 copies · chains A, D
EDO · 1,2-ethanediol · additive · 2 copies · chains A, E, D, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6WMI · ZNF410 zinc fingers 1-5 with 17 mer blunt DNA Oligonucleotide · the same entry in another collection · chain B against B, TM-score 1.00
Q86VK4 · AlphaFold monomer V2.0 prediction for zinc finger protein 410 (Q86VK4) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q86VK4
Elsewhere: RCSB PDB 6WMI · PDBe 6WMI · UniProt Q86VK4

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