MolNFT v1 · #168621 · protein
Periplasmic edta-binding protein eppa, tetragonal
6WM6 · Extracellular solute-binding protein, family 5: “Periplasmic edta-binding protein eppa, tetragonal”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.81). MolNFT v1 #168621 on GenesisL1: 3D structure, binding sites…
- PDB
- 6WM6
- Type
- protein
- Length
- 536 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular solute-binding protein, family 5
- UniProt
- Q11H97
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular solute-binding protein, family 5 | protein | 536 | 30% helix, 22% strand | Q11H97 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.81 | 0.83 | 88 | SO4, EDO |
| 2 | 224 | 0.72 | 0.88 | 28 | EDO |
| 3 | 59 | 0.34 | 0.77 | 16 | EDO |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6WM6 · Periplasmic EDTA-binding protein EppA, tetragonal · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11H97
- Elsewhere: RCSB PDB 6WM6 · PDBe 6WM6 · UniProt Q11H97
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