MolNFT v1 · #168608 · RNA

Apo V. cholerae glycine riboswitch models, 4.8 ångström resolution

6WLT · RNA (231-mer): “Apo V. cholerae glycine riboswitch models, 4.8 ångström resolution”. Electron microscopy, 11 pockets (best druggability 0.72). MolNFT v1 #168608 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6WLT
Type: RNA
Length: 231 nucleotides
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (231-mer)
Pockets: 11 · best druggability 0.72

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (231-mer)	rna	231	—	—

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	857	0.72	0.79	49	empty
2	957	0.69	0.75	43	empty
3	851	0.65	0.74	41	empty
4	518	0.59	0.74	26	empty
5	327	0.50	0.73	22	empty

Compared structures

6WLT · Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6WLT · PDBe 6WLT

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