MolNFT v1 · #16857 · protein
Multimodular pneumococcal cell wall endolysin from phage cp-1 complexed with choline
1OBA · Lysozyme: “Multimodular pneumococcal cell wall endolysin from phage cp-1 complexed with choline”. X-ray diffraction, 1 ligand (CHT), 2 pockets (best druggability 0.38). MolNFT v1 #16857 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1OBA
- Type
- protein
- Length
- 338 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P15057
- Ligands
- CHT
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 338 | 19% helix, 38% strand | P15057 |
Ligands and binding sites
- CHT · Choline ion · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.38 | 0.74 | 28 | empty |
| 2 | 78 | 0.34 | 0.75 | 19 | empty |
Compared structures
- 1OBA · Multimodular Pneumococcal Cell Wall Endolysin from phage Cp-1 complexed with choline · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15057
- Elsewhere: RCSB PDB 1OBA · PDBe 1OBA · UniProt P15057
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