MolNFT v1 · #16855 · protein
Holliday junction resolving enzyme
1OB8 · Holliday-junction resolvase: “Holliday junction resolving enzyme”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.32). MolNFT v1 #16855 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1OB8
- Type
- protein
- Length
- 246 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Holliday-junction resolvase
- UniProt
- Q97YX6
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Holliday-junction resolvase | protein | 119 | 34% helix, 37% strand | Q97YX6 |
| B | Holliday-junction resolvase | protein | 127 | 29% helix, 35% strand | Q97YX6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.32 | 0.76 | 23 | empty |
| 2 | 51 | 0.29 | 0.75 | 13 | SO4 |
Interfaces
1 interface between chains.
- A–B · 737 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97YX6
- Elsewhere: RCSB PDB 1OB8 · PDBe 1OB8 · UniProt Q97YX6
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