MolNFT v1 · #168547 · protein
2.0 ångström resolution crystal structure of NSP16-NSP10 heterodimer from SARS-cov-2 in complex with S-adenosyl-L-homocysteine
6WJT: “2.0 ångström resolution crystal structure of NSP16-NSP10 heterodimer from SARS-cov-2 in complex with…”. X-ray diffraction, 2 ligands (ZN, NA). MolNFT v1 #168547 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WJT
- Type
- protein
- Length
- 830 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- ZN, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 298 | — | P0DTD1 |
| B | — | protein | 122 | — | P0DTD1 |
| C | — | protein | 295 | — | P0DTD1 |
| D | — | protein | 115 | — | P0DTD1 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains B, D
- NA · Sodium ion · metal · 2 copies · chains A, C
- FMT · Formic acid · additive · 13 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WJT · 2.0 Angstrom Resolution Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 6WJT · PDBe 6WJT · UniProt P0DTD1
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