MolNFT v1 · #168398 · protein
Methylmalonyl-CoA epimerase in complex with methylmalonyl-CoA and NH4+
6WF7: “Methylmalonyl-CoA epimerase in complex with methylmalonyl-CoA and NH4+”. X-ray diffraction, 4 ligands (MC0, MCA, SO4), 1 pocket (best druggability 0.60). MolNFT v1 #168398 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6WF7
- Type
- protein
- Length
- 144 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methylmalonyl-CoA epimerase
- UniProt
- Q9L2C2
- Ligands
- MC0, MCA, SO4, NH4
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methylmalonyl-CoA epimerase | protein | 144 | 25% helix, 40% strand | Q9L2C2 |
Ligands and binding sites
- MC0 · (S)-Methylmalonyl-Coenzyme A · ligand · chains A
- MCA · Methylmalonyl-coenzyme A · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- NH4 · Ammonium ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.60 | 0.85 | 35 | MC0, MCA |
Compared structures
- 6WF7 · Methylmalonyl-CoA epimerase in complex with methylmalonyl-CoA and NH4+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9L2C2
- Elsewhere: RCSB PDB 6WF7 · PDBe 6WF7 · UniProt Q9L2C2
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